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  • SDSC Expertise



     Ahmed-Waeil M. Elgamal

     Allan Snavely

    • Funding Source: NSF, UC Lawrence Livermore National Laboratory, DOE Washington, D.C., INTEL Corporation, UC Lawrence Berkeley Laboratory, USDI
    • Director, Performance Modeling and Characterization (PMaC) Laboratory at SDSC
    • Expertise: HPC, Development of Software, Middleware, Tools for Analysis, Performance Modeling and Characterization
    • Phone: (858) 534-5158
    • Email: allans@sdsc.edu
    • Website: http://www.sdsc.edu/~allans/allans.html

     Amarnath Gupta

    • Funding Source: NSF, NIH, National Archives, Moore Foundation, Connell Foundation, Keck Graduate Institute
    • Director, Advanced Query Processing Laboratory in Data and Knowledge Systems group
    • Expertise: Research: Information integration techniques, Graph Query Language and Processors, Ontology Management, Multimedia Information Retrieval; CI Design/Implementation: Information and Knowledge management in Cyberinfrastructure: Multi-domain Scientific information systems, Domain-specific computation/analysis and data mining systems, Interface between domain science, computer science and CI design
    • Phone: (858) 822-0994
    • Email: gupta@sdsc.edu
    • Website: http://www.sdsc.edu/~gupta

     Amit Chourasia

    • Funding Source: NSF, AUS Teragrid Funding, UCSD - LLNL funding, NPACI
    • Leader, Visualization Services at SDSC
    • Expertise: Scientific Visualization, Computer Graphics, 3D Modeling and Animation
    • Phone: (858) 822-3656
    • Email: amit@sdsc.edu
    • Website: http://users.sdsc.edu/~amit

     Amitava Majumdar

    • Funding Source: NSF, UC Lab Funding, industry (Microsoft)
    • Area Director, Advanced User Support for TeraGrid
    • Expertise: High Performance Computing, Parallel Algorithms, Monte Carlo simulations, HPC performance optimization, HPC-medical applications
    • Phone: (858) 534-8356
    • Email: majumdar@sdsc.edu
    • Website: http://www.sdsc.edu/~majumdar

     Angela D. Mason

    • Funding Source: McCarthy Family Foundation (San Diego)
    • Education Program Manager at SDSC
    • Expertise: Education
    • Phone: (858) 534-5064
    • Email: amason@ucsd.edu

     Arcot Kuppuswam Rajasekar

    • Funding Source: National Science Foundation (NSF)
    • Director, Data Grid Technologies Group at SDSC
    • Expertise: Distributed data management
    • Phone:
    • Email: sekar@sdsc.edu

     Arun Swaran Jagatheesan

    • Funding Source: National Science Foundation (NSF)
    • Co-Chair, Grid File Systems Working Group, Global Grid Forum
    • Expertise: Cyberinfrastructure, Scientific data management; Data Grids; Digital Libraries; Petabyte scale data management; Inter-continental collaboration management
    • Phone: (858) 822-5452
    • Email: arun@sdsc.edu
    • Website: http://users.sdsc.edu/~arun

     Chaitanya Krishna Baru

    • Funding Source: NSF (CISE, BIO, SBE, ENG, ITR, MRE), Moore Foundation, Mathers Foundation, UC Discovery Grant, Industry (ESRI, Polexis), American Red Cross
    • Director, CI-RED Project Advisory Council
    • Expertise: Scientific data management, portal-based science environments, distributed information systems, information integration, parallel database systems and data intensive cloud computing, geoinformatics, information systems for urgent response and disaster management
    • Phone: (858) 534-5035
    • Email: baru@sdsc.edu

     David Lawrence Hart

    • Funding Source: National Science Foundation (NSF)
    • TeraGrid Area Director for User-Facing Projects and Core Services
    • Expertise: User Management/Utilization Monitoring across HPC Computing Grids
    • Phone: (858) 822-5470
    • Email: dhart@sdsc.edu
    • Website: http://www.sdsc.edu/~dhart

     David R. Nadeau

    • Funding Source: NSF, NIH General Medical Science
    • Senior Visualization Researcher
    • Expertise: Development of Software, Middleware, Tools for Analysis; Data Visualization Techniques, software, toolkits
    • Phone: (858) 534-5062
    • Email: nadeau@sdsc.edu
    • Website: http://www.sdsc.edu/~nadeau

     Diane A. Baxter

    • Funding Source: NSF, NEH (National Endowment for the Humanities)
    • Director of Education at SDSC
    • Expertise: Science and Technology Education, Outreach, and Training, authentic assessment, environmental science, standards-based curriculum, broadening participation, research experience
    • Phone: (858) 822-5482
    • Email: dbaxter@sdsc.edu
    • Website: http://education.sdsc.edu

     Dmitri Vitali Krioukov

    • Funding Source: NSF, DHS, Cisco Systems, CNS
    • Researcher, Cooperative Association for Internet Data Analysis
    • Expertise: Networking, Internet Topology and Routing, Complex Networks
    • Phone: (858) 822-5476
    • Email: dima@caida.org
    • Website: http://www.caida.org/~dima

     Dmitry Pekurovsky

    • Funding Source: National Science Foundation (NSF)
    • Programmer/Analyst at SDSC
    • Expertise: HPC
    • Phone: (858) 822-3612
    • Email: dmitry@sdsc.edu

     Erin E. Kenneally

    • Funding Source: USDI/Misc Agencies, USDJ Office Of Justice Programs, NSF, USDOJ
    • Cyber Forensics Analyst
    • Expertise: Digital forensics, Information Security, and Privacy Technology; Cyberlaw, Digital Evidence, Information Technology Law, Cyber Risk
    • Phone: (858) 822-0991
    • Email: erin@sdsc.edu
    • Website: http://www.calit2.net/people/detail.php?id=499

     Hans-Werner Braun

    • Funding Source: National Science Foundation (NSF)
    • Principal Investigator, High Performance Wireless Research and Education Network (HPWREN)
    • Expertise: Development and deployment of network infrastructure and measurement/analysis tools, as well as sensor networks
    • Phone:
    • Email: hwb@hpwren.ucsd.edu
    • Website: http://hpwren.ucsd.edu/~hwb

     Ilkay Altintas

    • Funding Source: # National Science Foundation (OCI, BIO, CISE), DOE Scidac, Moore Foundation # CI-RED Deputy Coordinator, Research
    • Director, Scientific Workflow Automation Technologies (SWAT) Laboratory
    • Expertise: Scientific workflows, Provenance of scientific data and processes, Streaming data architectures, Science and engineering Cyberinfrastructure for sensor
    • Phone: (858) 822-5453
    • Email: altintas@sdsc.edu
    • Website: http://users.sdsc.edu/~altintas

     Ilya Zaslavsky

    • Funding Source: San Diego Foundation; NSF; Environmental Systems Research Institute
    • Director, Spatial Information Systems Laboratory
    • Expertise: Data management, acquisition, collections; Complex information management; Spatial Information integration and management GIS; Science Web Portals Development
    • Phone: (858) 534-8342
    • Email: zaslavsk@sdsc.edu
    • Website: http://spatial.sdsc.edu/lab/People/IlyaZaslavsky/tabid/74/Default.aspx

     John Joseph Helly

    • Funding Source: NSF, ONR, NASA, NIH, State of California
    • Director, Laboratory for Environmental and Earth Science
    • Expertise: Remote Sensing, Realtime Data Aquisition, Wireless Sensor Networks, Hydrology, Geophysics, Physical and Biological Oceanography, Climate Science, Coastal Management, Geospatial Analysis, Mathematical Modeling, Space Systems Architecture, Hybrid Computational Environments, Data Analysis and Statistics, Visualization
    • Phone: (858) 534-5060
    • Email: hellyj@ucsd.edu
    • Website: http://www.sdsc.edu/~hellyj

     Julia Vladimi Ponomarenko

    • Funding Source: NIH Heart, Lung & Blood; NIH R01; NIAID
    • Senior Research Scientist, Computational Biology
    • Expertise: Scientific applications, databases and computational research in the fields of bioinformatics, specifically, structural and functional genomics and protein-DNA interactions, and immunological informatics, specifically, prediction of immune epitopes
    • Phone: (858) 822-5415
    • Email: jpon@sdsc.edu
    • Website: http://www.sdsc.edu/~jpon

     Karen Ingeborg Stocks

    • Funding Source: NSF (GEO and BIO), Alfred P. Sloan Foundation, Gordon and Betty Moore Foundation, Natural Resources Defense Council, National Ocean Partnership Program
    • Assistant Research Scientist at SDSC
    • Expertise: Information Technology/domain-scientist interface for applications in Ecology and Oceanography
    • Phone: (858) 534-5009
    • Email: kstocks@sdsc.edu
    • Website: http://pacific.sdsc.edu/seamounts/static/stockspage.php

     Kim K. Baldridge

    • Funding Source: HHSOHDS/Miscellaneous Agencies, U.S.-ISRAEL Binat'l Science Foundation, Capital University, NSF, DN Space & Naval Warfare Systems CO
    • Principal Investigator, Baldridge Research Group, Theoretical Chemistry and Computational Grid Applications, The Institute of Organic Chemistry (OCI) at the University of Zurich
    • Expertise: Computational Chemistry, Development of Software, Middleware, Tools for Analysis
    • Phone:
    • Email: kimb@oci.unizh.ch
    • Website: http://www.oci.uzh.ch/group.pages/baldridge/index.php

     Kimberly C. Claffy

    • Funding Source: DOE, NSF, Cisco Systems Inc., DN Space & Naval Warfare Systems CO, FED Homeland Security, Intel Corp, Miscellaneous Sponsors
    • Principal InvestigatoR, distributed Cooperative Association for Internet Data Analysis (CAIDA)
    • Expertise: Development of network-aware tools
    • Phone: (858) 534-8333
    • Email: kc@caida.org
    • Website: http://cseweb.ucsd.edu/users/kc

     Lynn Forest Ten Eyck

    • Funding Source: NIH General Medical Science, National; NSF; DOE
    • Associate Director, Computational Science Research at SDSC
    • Expertise: CI-scientist/domain-scientist interface for domain applications, Domain specific computational and analysis software (e.g., Structural Bioinformatics);
    • Phone: (858) 534-5141
    • Email: lteneyck@sdsc.edu
    • Website: http://www.sdsc.edu/~teneyckl

     Mark Alan Miller

    • Funding Source: NSF, NIH General Medical Science, IBM
    • Principal Investigator, Biology at SDSC
    • Expertise: Portals, Analytical Tools, and Cyberinfrastructure for Biological Sciences
    • Phone: (858) 822-0866
    • Email: mmiller@sdsc.edu
    • Website: http://www.sdsc.edu/~mmiller

     Mark E. Sheddon

    • Funding Source: National Science Foundation (NSF)
    • Associate Director at SDSC
    • Expertise: HPC
    • Phone: (858) 534-5130
    • Email: sheddon@sdsc.edu

     Michael Norman

    • Funding Source:
    • Director, Laboratory for Computational Astrophysics (LCA)
    • Expertise: Astrophysics, advanced computational methods, large-scale simulations of astrophysical and cosmological systems
    • Phone: (858) 822-5461
    • Email: mlnorman@sdsc.edu

     Mihail Baitaliuc

    • Funding Source: NIH General Medical Science, National
    • Programmer/Analyst at SDSC
    • Expertise: Systems Molecular Biology, Bioinformatics, Integrative Genomics, Data Integration, Data Visualization Techniques, Bioinformatics software
    • Phone: (858) 822-5418
    • Email: baitaluk@sdsc.edu

     Nancy Ruth Wilkins-Diehr

    • Funding Source: National Science Foundation (NSF)
    • Associate Director at SDSC
    • Expertise: HPC, expand to web and grid technologies, Gateways
    • Phone: (858) 534-5118
    • Email: wilkinsn@sdsc.edu

     Natasha Balac

    • Funding Source: HHSOHDS/Miscellaneous Agencies & DE
    • CI-RED Deputy Coordinator, R&D Services
    • Expertise: Data mining, large data management and analysis, portals, scientific data management, data intensive computing
    • Phone: (858) 534-5161
    • Email: natashab@sdsc.edu

     Peter W. Arzberger

    • Funding Source: National Science Foundation (NSF)
    • Principal Investigator/Director, National Biomedical Computation Resources (NBCR)
    • Expertise: International infrastructure and collaborations, Cyberinfrastucture architecture for projects, CI-scientist/domain-scientist interface for domain applications, computational and analysis software for bioinformatics, Science Web Portals Development
    • Phone: (858) 822-1079
    • Email: parzberg@ucsd.edu
    • Website: http://nbcr.sdsc.edu/parzberger.php

     Philip E. Bourne

    • Funding Source: Ceres Inc., Keck Graduate Institute Of Applied Life Sciences, NIH Allergy & Infectious Diseases, NIH General Medical Science, NSF, Rutgers
    • Professor, Department of Pharmacology and Skaggs School of Pharmacy and Pharmaceutical Sciences at UCSD
    • Expertise: Structural bioinformatics, CI-scientist/domain-scientist interface for domain applications, Domain specific computational and analysis software
    • Phone: (858) 534-8301
    • Email: bourne@sdsc.edu
    • Website: http://www.sdsc.edu/~bourne | Bourne Laboratory Website

     Philip M. Papadopoulos

    • Funding Source: National Science Foundation (NSF)
    • Program Director, UC Computing Systems at SDSC
    • Expertise: Development of Software, Middleware, Tools for Analysis: Open-source, extensible and scalable toolkits for clusters
    • Phone: (858) 822-3628
    • Email: phil@sdsc.edu
    • Website: http://users.sdsc.edu/~phil

     Richard Lee Moore

    • Funding Source: UCOP/California Digital Library, FED General Services Administration, USDJ Federal Bureau Of Investigation, Library Of Congress, NSF
    • Deputy Director at SDSC
    • Expertise: High Performance Computing, Digital Preservation
    • Phone: (858) 822-5457
    • Email: rlm@sdsc.edu

     Ross Charles Walker

    • Funding Source: DOE Washington, D.C., UCLab
    • Assistant Research Professor at SDSC
    • Expertise: HPC, Computational Chemistry, Computational Molecular Biology (QM/MM and Classical Molecular Dynamics, AMBER and CHARMM developer, Biofuels, Enzyme reactivity)
    • Phone: (858) 822-0854
    • Email: rcw@sdsc.edu
    • Website: http://www.rosswalker.co.uk

     Shankar Subramaniam

    • Funding Source: NIH General Medical Science, National; University of Texas-Dallas; NSF, DA Army Research, Washington D.C. Office; United Kingdom, Government of Great Britain
    • Director, Complex Systems at SDSC
    • Expertise: Information Technology/domain-scientist interface for domain applications, Domain specific computational and analysis software (e.g., Structural Bioinformatics); Science Web Portals Development
    • Phone: (858) 822-0986
    • Email: shankar@sdsc.edu
    • Website: http://genome.ucsd.edu/People/Index.html

     Shava Smallen

    • Funding Source: National Science Foundation (NSF)
    • Programmer/Analyst at SDSC
    • Expertise: HPC, Development of Grid Software, Middleware, Tools for Analysis
    • Phone: (858) 822-0962
    • Email: ssmallen@sdsc.edu
    • Website: http://users.sdsc.edu/~ssmallen

     Sidney Karin

    • Funding Source: DAF/AIR Force Misc Bases & Agencies
    • Professor, Computer Science and Engineering at UCSD
    • Expertise: High-performance computing, computer security
    • Phone: (858) 534-5064
    • Email: skarin@ucsd.edu
    • Website: http://www.sdsc.edu/~skarin

     Sriram Krishnan

    • Funding Source: NSF, NIH, Moore Foundation
    • Senior Distributed Systems Researcher and Group Leader
    • Expertise: Services-oriented science, Cyberinfrastructures for science and engineering, Web services, Grid and Cloud computing, Scientific workflows
    • Phone: (858) 822-5425
    • Email: sriram@sdsc.edu
    • Website: http://users.sdsc.edu/~sriram

     Yifeng Cui

    • Funding Source: National Science Foundation (NSF)
    • Programmer/Analyst at SDSC
    • Expertise: Computational capabilities on HPC machines
    • Phone: (858) 822-0916
    • Email: yfcui@sdsc.edu